Time Varying R in Bicol Region as of September 22, 2020

The following figure shows the output plots: Epidemic Curve, Estimated R, and Explored Serial Interval Distribution

Computed R (Mean R) Value for Bicol Region on September 22 or Day 180

(Please ignore the warning message)

FALSE      Mean(R)     Std(R)
FALSE 1: 0.8191107 0.07881897
FALSE    Quantile.0.025(R) Quantile.0.05(R) Quantile.0.25(R) Median(R)
FALSE 1:         0.6719324        0.6939178        0.7646607  0.816584
FALSE    Quantile.0.75(R) Quantile.0.95(R)
FALSE 1:        0.8708069        0.9529229

References:

R Core Team (2017). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URLhttps://www.R-project.org/

packages used: dplyr, data.table, lubridate, reshape2, ggplot2, EpiEstim, epicontacts, googlesheets4, readxl

Help us improve our viz. Send a pull request at link

H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016

Matt Dowle and Arun Srinivasan (2019). data.table: Extension of data.frame. R package version 1.12.8. https://CRAN.R-project.org/package=data.table

Hadley Wickham, Romain Fran